PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00281.1.g00510.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28284.5 Da    PI: 5.3699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00281.1.g00510.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1955108456
                                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ft+eq++ Le++F+  + ++  +e++eLA+ lgL+ rqV +WFqN+Ra+++
  Zpz_sc00281.1.g00510.1.am.mk  55 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARDLGLQPRQVAIWFQNKRARWR 108
                                   458**************9899********************************9 PP

2HD-ZIP_I/II125.42.6e-4053146193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                   e+krr+++eq+++LE++F++++ kLep++K+elar+Lglqprqva+WFqn+RAR+++kqlE+dy+aLk++ydal++  e+L
  Zpz_sc00281.1.g00510.1.am.mk  53 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARDLGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKYDALHACVESL 133
                                   69******************999********************************************************** PP

                   HD-ZIP_I/II  81 ekeveeLreelke 93 
                                   ++e+ +L+++l+e
  Zpz_sc00281.1.g00510.1.am.mk 134 KQEKLALTAQLHE 146
                                   *********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.83E-1841112IPR009057Homeodomain-like
PROSITE profilePS5007117.49149110IPR001356Homeobox domain
SMARTSM003892.0E-1952114IPR001356Homeobox domain
CDDcd000866.31E-1754111No hitNo description
PfamPF000464.6E-1755108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1955117IPR009057Homeodomain-like
PRINTSPR000311.2E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.2E-690106IPR000047Helix-turn-helix motif
PfamPF021833.5E-14110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDLSDHHQHQ FFVPPQPQPQ QLCVQTMMDA EQSFLVGRGG GAGGGVAAGM RGERKRRFTE  60
EQIRSLESMF HAHHAKLEPR EKAELARDLG LQPRQVAIWF QNKRARWRSK QLEHDYAALK  120
SKYDALHACV ESLKQEKLAL TAQLHELNER LREREDRARS SAGAAATASS SSCNGGGEEE  180
VEDDKRNVLA GCVDMEPPES CVLGGPCATP ADVSVGSEYD DHHVDYDHGF PESFCAATPE  240
LWEPWPLVEW NAVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282501e-143KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-121PREDICTED: homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK01e-97HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-97HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLK3Y8K81e-119K3Y8K8_SETIT; Uncharacterized protein
STRINGSi010550m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-33homeobox 7